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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
89
total RNA-seq
4
ATAC-seq
2
DNase-seq
Assay category
135
DNA binding
89
Transcription
6
DNA accessibility
Target of assay
102
histone modification
101
histone
51
narrow histone mark
49
broad histone mark
34
transcription factor
7
RNA binding protein
chromatin remodeller
2
control
Date released
276
May, 2021
267
November, 2017
230
August, 2017
209
June, 2019
207
May, 2020
207
October, 2019
182
February, 2021
164
July, 2018
105
August, 2021
96
May, 2019
74
December, 2017
72
September, 2018
71
November, 2018
67
July, 2019
64
April, 2019
56
November, 2019
49
April, 2018
42
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
28
December, 2018
20
January, 2019
16
March, 2020
13
October, 2017
11
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
230
bam
230
fastq
228
bigWig
113
bed narrowPeak
89
tsv
35
bigBed narrowPeak
29
bed bed3+
18
bed broadPeak
17
tagAlign
12
bigBed broadPeak
Organism
224
Homo sapiens
Biosample type
142
tissue
47
in vitro differentiated cells
41
primary cell
Organ
152
pancreas
63
connective tissue
19
liver
17
epithelium
adipose tissue
Project
230
AMP
Genome assembly (visualization)
258
hg19
230
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
14
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
21
89
1
liver
18
pancreas
12
right lobe of liver
1
in vitro differentiated cells
adipocyte
46
1
primary cell
pancreatic endocrine cell
12
skeletal muscle myoblast
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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