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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
254
Transcription
DNA binding
107
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
3
control
Date released
90
May, 2020
67
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
31
July, 2019
17
June, 2019
8
October, 2019
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
Available data
360
bam
349
bigWig
252
tsv
144
fastq
62
bed narrowPeak
45
bigBed narrowPeak
27
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
381
Homo sapiens
Biosample type
1226
tissue
381
primary cell
178
in vitro differentiated cells
123
cell line
Organ
157
epithelium
127
pancreas
25
connective tissue
13
kidney
13
vasculature
12
brain
10
blood vessel
10
liver
7
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
282
AMP
96
T1D
3
HPAP
Genome assembly (visualization)
381
hg19
329
GRCh38
Lab
280
AMP-T2D consortium
98
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
22
inconsistent ontology term
4
audit script error
target.investigated_as!
chromatin remodeller
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
381 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
12
7
1
pancreatic alpha cell
10
12
6
1
pancreatic acinar cell
4
12
5
1
pancreatic ductal cell
4
10
4
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