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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
377
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
251
November, 2017
93
February, 2021
47
November, 2018
25
December, 2018
23
August, 2021
20
October, 2019
14
January, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
487
bigWig
479
bam
370
bed narrowPeak
337
fastq
321
bigBed narrowPeak
105
tsv
55
bed broadPeak
55
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
500
Homo sapiens
Biosample type
1753
tissue
627
primary cell
500
cell line
294
in vitro differentiated cells
3
stem cell
Organ
310
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
52
epithelium
45
blood
45
bodily fluid
12
kidney
8
embryo
Project
496
AMP
4
T1D
Genome assembly (visualization)
500
hg19
436
GRCh38
Lab
485
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
500 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
302
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
3
1
GM12878
44
1
H1-hESC
8
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