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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
108
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
108
histone
108
histone modification
85
narrow histone mark
23
broad histone mark
3
control
Date released
78
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
144
bigWig
141
bam
129
bed narrowPeak
54
bigBed narrowPeak
37
tagAlign
25
bed bed3+
25
bed broadPeak
22
bigBed broadPeak
12
tsv
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
149
Homo sapiens
Biosample type
137
tissue
12
primary cell
Organ
658
pancreas
587
connective tissue
426
adipose tissue
351
liver
304
epithelium
188
heart
159
vasculature
156
blood vessel
149
brain
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
45
blood
45
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
149
AMP
Genome assembly (visualization)
154
GRCh38
149
hg19
Lab
149
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
chromatin remodeller
month_released!
November, 2017
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 63 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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