Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
170
DNA binding
89
Transcription
10
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
273
August, 2017
266
November, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
74
December, 2017
72
September, 2018
65
April, 2019
64
November, 2018
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
28
December, 2018
20
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
267
bigWig
252
fastq
249
bam
139
bed narrowPeak
89
tsv
41
bigBed narrowPeak
40
bed broadPeak
38
tagAlign
33
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
267
Homo sapiens
Biosample type
180
tissue
47
in vitro differentiated cells
46
primary cell
Organ
159
pancreas
62
connective tissue
20
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
273
AMP
Genome assembly (visualization)
273
hg19
246
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
14
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
273 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
46
1
primary cell
skeletal muscle myoblast
14
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
Download