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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
527
ChIP-seq
254
total RNA-seq
100
single cell RNA-seq
59
ATAC-seq
29
DNase-seq
2
Hi-C
2
small RNA-seq
1
WGBS
Assay category
527
DNA binding
356
Transcription
88
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
318
transcription factor
232
histone
232
histone modification
119
narrow histone mark
113
broad histone mark
88
recombinant protein
67
RNA binding protein
chromatin remodeller
4
control
2
other context
2
other post-translational modification
Date released
210
November, 2017
154
May, 2021
94
February, 2021
72
September, 2018
50
November, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
October, 2019
41
August, 2017
25
December, 2018
18
July, 2019
14
January, 2019
13
November, 2019
11
August, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
December, 2017
3
June, 2018
3
September, 2020
2
October, 2018
1
March, 2023
Available data
962
bam
946
bigWig
592
bed narrowPeak
524
fastq
399
bigBed narrowPeak
356
tsv
112
tagAlign
85
bed broadPeak
85
bigBed broadPeak
35
bed bed3+
2
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
974
Homo sapiens
Biosample type
tissue
535
primary cell
436
cell line
in vitro differentiated cells
3
stem cell
Organ
274
epithelium
261
liver
247
pancreas
86
vasculature
82
blood vessel
74
heart
66
artery
44
blood
44
bodily fluid
40
kidney
32
connective tissue
14
brain
12
vein
11
musculature of body
8
embryo
3
eye
2
adipose tissue
1
pericardium
Project
779
AMP
184
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
1130
hg19
974
GRCh38
1
hg18
Lab
783
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
93
inconsistent ontology term
1
inconsistent replicate
Audit category:
45
missing controlled_by
Audit category:
19
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
974 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
WGBS
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
+ See 75 more…
cell line
HepG2
243
5
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
GM12878
44
H1-hESC
8
+ See 7 more…
stem cell
hESC
3
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