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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
704
ChIP-seq
216
total RNA-seq
134
single cell RNA-seq
43
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
704
DNA binding
350
Transcription
83
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
165
histone modification
164
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
chromatin remodeller
5
other context
5
other post-translational modification
Date released
309
November, 2017
232
August, 2017
81
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
49
December, 2017
45
February, 2021
44
April, 2018
41
September, 2020
33
December, 2018
24
January, 2019
17
October, 2017
11
September, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
2864
bam
2662
bigWig
1520
bed narrowPeak
1373
tsv
1160
fastq
992
bigBed narrowPeak
316
bed broadPeak
279
bigBed broadPeak
274
tagAlign
246
bed bed3+
153
zippedFastqFolder
152
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1153
Homo sapiens
Biosample type
408
primary cell
397
cell line
351
tissue
in vitro differentiated cells
4
stem cell
Organ
447
pancreas
428
liver
238
epithelium
50
blood
50
bodily fluid
46
connective tissue
43
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
991
AMP
169
HPAP
Genome assembly (visualization)
839
hg19
802
GRCh38
1
hg18
Lab
989
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
25
inconsistent control
7
inconsistent ontology term
Audit category:
77
missing controlled_by
Audit category:
28
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
biosample_type!
in vitro differentiated cells
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
1160 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
13
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
13
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 18 more…
cell line
HepG2
340
5
1
1
GM12878
50
tissue
islet of Langerhans
28
91
6
2
1
1
liver
65
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
+ See 8 more…
stem cell
hESC
3
1
See all biosamples
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