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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
3
Hi-C
1
MPRA
Assay category
56
Transcription
3
3D chromatin structure
3
DNA accessibility
Date released
689
February, 2021
391
November, 2017
342
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
49
April, 2018
49
December, 2017
47
September, 2023
40
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
41
fastq
19
zippedFastqFolder
3
bedpe bed3+
3
bigWig
3
cool
3
hic
1
txt
Organism
62
Homo sapiens
Biosample type
62
primary cell
1
cell line
Organ
22
epithelium
22
pancreas
Project
62
HPAP
1
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
62
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
3
audit script error
target.investigated_as!
chromatin remodeller
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
63 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
MPRA
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
1
pancreatic beta cell
1
1
1
pancreatic acinar cell
1
cell line
MIN6
1
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