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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
318
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
204
November, 2017
92
February, 2021
50
November, 2018
25
December, 2018
20
October, 2019
14
January, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
435
bam
426
bigWig
330
bed narrowPeak
295
bigBed narrowPeak
293
fastq
104
tsv
41
bed broadPeak
41
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
436
Homo sapiens
Biosample type
1817
tissue
535
primary cell
436
cell line
262
in vitro differentiated cells
3
stem cell
Organ
250
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
49
epithelium
44
blood
44
bodily fluid
12
kidney
8
embryo
Project
432
AMP
4
T1D
Genome assembly (visualization)
500
hg19
436
GRCh38
Lab
436
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
436 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
243
5
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
GM12878
44
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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