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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
chromatin remodeller
Date released
126
May, 2021
52
August, 2017
42
December, 2017
39
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
288
bam
256
bigWig
138
fastq
131
tsv
129
bed narrowPeak
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
351
Homo sapiens
Biosample type
2537
tissue
987
primary cell
612
cell line
351
in vitro differentiated cells
10
stem cell
Organ
81
connective tissue
29
embryo
20
epithelium
14
liver
1
adipose tissue
1
heart
Project
351
AMP
Genome assembly (visualization)
277
hg19
244
GRCh38
4
hg18
Lab
297
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
chromatin remodeller
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
51
5
8
1
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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