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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
140
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
chromatin remodeller
Date released
121
May, 2021
50
August, 2017
35
August, 2021
31
February, 2018
29
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
247
bam
216
bigWig
131
tsv
105
fastq
89
bed narrowPeak
28
tagAlign
21
bed bed3+
11
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
336
Homo sapiens
Biosample type
2426
tissue
972
primary cell
613
cell line
336
in vitro differentiated cells
9
stem cell
Organ
79
connective tissue
21
embryo
15
epithelium
9
liver
2
pancreas
1
adipose tissue
1
heart
Project
336
AMP
Genome assembly (visualization)
254
hg19
222
GRCh38
4
hg18
Lab
292
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
13
inconsistent control read length
target.investigated_as!
chromatin remodeller
narrow histone mark
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
49
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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