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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
180
single cell RNA-seq
151
ATAC-seq
56
snATAC-seq
48
ChIP-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
425
Transcription
209
DNA accessibility
56
DNA methylation
48
DNA binding
10
3D chromatin structure
Target of assay
30
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
139
May, 2020
134
May, 2022
82
February, 2023
78
May, 2021
59
September, 2020
47
February, 2021
43
April, 2018
42
July, 2018
29
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
4
June, 2019
4
November, 2020
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2018
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
574
bigWig
563
bam
401
fastq
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
764
Homo sapiens
Biosample type
1706
tissue
764
primary cell
187
cell line
160
in vitro differentiated cells
7
stem cell
Organ
296
epithelium
273
pancreas
19
connective tissue
16
vasculature
14
blood vessel
11
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
5
heart
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
324
AMP
324
HPAP
115
T1D
1
ITG
Genome assembly (visualization)
323
hg19
264
GRCh38
Lab
324
Klaus Kaestner, Upenn
319
AMP-T2D consortium
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
chromatin remodeller
files.file_type!
bed narrowPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
764 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
6
31
1
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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