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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
7
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
13
July, 2019
10
October, 2017
10
October, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
238
bam
217
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
66
Homo sapiens
Biosample type
56
tissue
10
primary cell
Organ
335
pancreas
242
epithelium
161
liver
135
connective tissue
130
heart
97
kidney
89
bone element
80
adipose tissue
66
brain
42
vasculature
40
blood vessel
30
musculature of body
23
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
11
spleen
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
missing controlled_by
target.investigated_as!
chromatin remodeller
files.file_type!
bed narrowPeak
month_released!
May, 2023
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
substantia nigra
4
+ See 18 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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