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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
85
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
1
February, 2020
1
January, 2018
Available data
92
bam
76
bigWig
71
bed narrowPeak
70
bigBed narrowPeak
50
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
51
cell line
43
tissue
8
primary cell
Organ
946
pancreas
768
liver
682
connective tissue
523
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
8
T1D
Genome assembly (visualization)
76
hg19
75
GRCh38
Lab
94
AMP-T2D consortium
8
Kyle Gaulton, UCSD
target.investigated_as!
chromatin remodeller
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
50
1
tissue
tibial nerve
35
5
1
2
primary cell
peripheral blood mononuclear cell
8
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