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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
5
DNase-seq
Assay category
54
DNA binding
5
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
54
November, 2017
3
November, 2018
2
June, 2019
Available data
658
bam
599
bigWig
442
fastq
418
bed narrowPeak
335
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
59
Homo sapiens
Biosample type
54
cell line
3
tissue
2
primary cell
Organ
78
kidney
59
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
59
AMP
Genome assembly (visualization)
59
hg19
45
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
12
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
DNase-seq
cell line
HepG2
54
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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