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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
72
ChIP-seq
Assay category
199
DNA accessibility
72
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
60
November, 2017
14
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
3106
bam
2926
bigWig
1592
bed narrowPeak
1584
tsv
1322
fastq
938
bigBed narrowPeak
349
tagAlign
308
bed broadPeak
271
bigBed broadPeak
265
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
271
Homo sapiens
Biosample type
172
tissue
54
cell line
44
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
271
AMP
Genome assembly (visualization)
255
GRCh38
248
hg19
Lab
271
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
12
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
files.file_type!
bed bedgraph
month_released!
October, 2019
BIOSAMPLE
ASSAY
271 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
54
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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