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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
68
ChIP-seq
Assay category
194
DNA accessibility
68
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
56
November, 2017
13
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2883
bam
2722
bigWig
1519
bed narrowPeak
1401
tsv
1178
fastq
909
bigBed narrowPeak
352
tagAlign
299
bed broadPeak
262
bigBed broadPeak
235
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
262
Homo sapiens
Biosample type
171
tissue
55
cell line
36
primary cell
in vitro differentiated cells
Organ
78
kidney
59
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
262
AMP
Genome assembly (visualization)
246
GRCh38
240
hg19
Lab
262
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
12
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
organ_slims!
vasculature
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
262 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
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