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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
68
ChIP-seq
Assay category
195
DNA accessibility
68
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
56
November, 2017
14
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
3171
bam
2978
bigWig
1648
bed narrowPeak
1532
tsv
1316
fastq
925
bigBed narrowPeak
392
tagAlign
300
bed broadPeak
263
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
263
Homo sapiens
Biosample type
171
tissue
55
cell line
36
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
263
AMP
Genome assembly (visualization)
247
GRCh38
241
hg19
Lab
263
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
12
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
organ_slims!
vasculature
files.file_type!
tar
BIOSAMPLE
ASSAY
263 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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