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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
728
ChIP-seq
123
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
728
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
chromatin remodeller
5
other context
5
other post-translational modification
Date released
300
November, 2017
227
August, 2017
91
December, 2017
80
November, 2018
58
October, 2018
39
February, 2018
33
December, 2018
24
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2748
bam
2481
bigWig
1447
bed narrowPeak
1330
tsv
914
fastq
900
bigBed narrowPeak
298
tagAlign
269
bed broadPeak
236
bed bed3+
232
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
907
Homo sapiens
Biosample type
primary cell
397
cell line
375
tissue
138
in vitro differentiated cells
4
stem cell
Organ
442
liver
213
pancreas
96
connective tissue
50
blood
50
bodily fluid
44
adipose tissue
27
embryo
24
spleen
18
epithelium
12
brain
2
musculature of body
Project
914
AMP
Genome assembly (visualization)
747
hg19
689
GRCh38
5
hg18
Lab
888
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent control
4
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
38
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
biosample_type!
primary cell
BIOSAMPLE
ASSAY
914 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
340
5
1
1
GM12878
50
tissue
islet of Langerhans
28
103
20
1
1
liver
65
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
51
1
pancreatic endoderm
18
4
1
hepatocyte
14
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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