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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
267
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
chromatin remodeller
Date released
683
February, 2021
385
November, 2017
379
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
81
November, 2018
80
April, 2019
74
October, 2018
73
December, 2017
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
255
fastq
252
bigWig
250
bam
122
bed narrowPeak
89
tsv
85
tagAlign
40
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
372
Homo sapiens
Biosample type
284
tissue
66
in vitro differentiated cells
29
primary cell
Organ
188
pancreas
123
connective tissue
57
adipose tissue
54
liver
epithelium
26
musculature of body
Project
379
AMP
Genome assembly (visualization)
256
hg19
229
GRCh38
Lab
379
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
month_released!
February, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
379 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
65
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic endocrine cell
12
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