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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
121
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
171
DNA binding
123
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
96
histone
96
histone modification
49
transcription factor
48
broad histone mark
47
narrow histone mark
29
control
11
RNA binding protein
chromatin remodeller
Date released
132
May, 2021
66
August, 2017
42
August, 2021
42
December, 2017
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
249
bam
225
bigWig
116
tsv
113
bed narrowPeak
99
fastq
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
352
Homo sapiens
Biosample type
2775
tissue
1087
primary cell
632
cell line
352
in vitro differentiated cells
10
stem cell
Organ
95
connective tissue
23
epithelium
16
embryo
14
liver
3
pancreas
1
adipose tissue
1
heart
Project
352
AMP
Genome assembly (visualization)
263
hg19
231
GRCh38
4
hg18
Lab
298
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
target.investigated_as!
chromatin remodeller
month_released!
February, 2018
BIOSAMPLE
ASSAY
352 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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