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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
63
ChIP-seq
49
single cell RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
169
Transcription
63
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
244
bam
237
bigWig
164
tsv
131
fastq
66
bed narrowPeak
66
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
249
Homo sapiens
Biosample type
146
tissue
54
cell line
49
primary cell
Organ
164
pancreas
48
liver
33
epithelium
13
blood
13
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
249
AMP
Genome assembly (visualization)
236
GRCh38
228
hg19
Lab
249
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
249 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
40
1
GM12878
13
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic cell
4
pancreatic delta cell
4
+ See 10 more…
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