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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
173
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
chromatin remodeller
Date released
130
May, 2021
66
August, 2017
42
August, 2021
29
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
260
bam
235
bigWig
125
tsv
115
bed narrowPeak
111
fastq
40
tagAlign
22
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
362
Homo sapiens
Biosample type
2582
tissue
940
primary cell
623
cell line
362
in vitro differentiated cells
10
stem cell
Organ
95
connective tissue
embryo
23
epithelium
14
liver
3
pancreas
1
adipose tissue
1
heart
Project
362
AMP
Genome assembly (visualization)
273
hg19
241
GRCh38
3
hg18
Lab
308
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
chromatin remodeller
organ_slims!
embryo
month_released!
May, 2020
BIOSAMPLE
ASSAY
362 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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