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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
DNase-seq
108
ChIP-seq
2
ATAC-seq
Assay category
181
DNA accessibility
108
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
66
November, 2017
38
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2747
bam
2547
bigWig
1690
bed narrowPeak
1223
fastq
1122
tsv
962
bigBed narrowPeak
376
tagAlign
289
bed broadPeak
253
bigBed broadPeak
228
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
283
Homo sapiens
Biosample type
192
tissue
55
cell line
42
primary cell
Organ
78
kidney
59
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
289
AMP
Genome assembly (visualization)
266
hg19
250
GRCh38
Lab
287
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
chromatin remodeller
organ_slims!
ureter
connective tissue
BIOSAMPLE
ASSAY
289 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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