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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
103
ChIP-seq
2
ATAC-seq
Assay category
179
DNA accessibility
103
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
62
November, 2017
40
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3153
bam
2960
bigWig
1630
bed narrowPeak
1532
tsv
1316
fastq
907
bigBed narrowPeak
392
tagAlign
282
bed broadPeak
245
bigBed broadPeak
242
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
276
Homo sapiens
Biosample type
190
tissue
55
cell line
36
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
282
AMP
Genome assembly (visualization)
259
hg19
244
GRCh38
Lab
280
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
chromatin remodeller
organ_slims!
ureter
vasculature
BIOSAMPLE
ASSAY
282 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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