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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
14
ChIP-seq
Assay category
188
DNA accessibility
14
DNA binding
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
chromatin remodeller
Date released
169
June, 2019
November, 2017
14
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
2961
bam
2796
bigWig
1600
tsv
1465
bed narrowPeak
1013
fastq
693
bigBed narrowPeak
320
tagAlign
255
bed bed3+
233
bed broadPeak
202
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
202
Homo sapiens
Biosample type
158
tissue
42
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
ureter
13
vasculature
11
blood vessel
9
connective tissue
7
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
202
AMP
Genome assembly (visualization)
198
GRCh38
179
hg19
Lab
202
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
organ_slims!
ureter
month_released!
November, 2017
BIOSAMPLE
ASSAY
202 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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