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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
29
ATAC-seq
19
total RNA-seq
18
snATAC-seq
9
single cell RNA-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
55
DNA binding
51
DNA accessibility
28
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
25
December, 2018
21
October, 2019
19
April, 2020
13
November, 2018
12
January, 2019
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
1
March, 2020
Available data
77
bed narrowPeak
57
bam
51
bigWig
50
bigBed narrowPeak
50
fastq
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
139
Homo sapiens
Biosample type
76
tissue
51
cell line
13
primary cell
Organ
946
pancreas
768
liver
682
connective tissue
523
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
79
hg19
50
GRCh38
Lab
113
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
lung
10
9
1
pigmented layer of retina
12
2
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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