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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
51
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
51
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
150
February, 2021
25
December, 2018
13
November, 2018
12
January, 2019
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
1
October, 2019
Available data
116
bam
103
bigWig
88
txt
58
tsv
52
bed narrowPeak
50
fastq
44
bigBed narrowPeak
4
bed bed3
Organism
219
Homo sapiens
Biosample type
159
tissue
51
cell line
9
primary cell
Organ
946
pancreas
768
liver
682
connective tissue
523
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
210
AMP
9
T1D
Genome assembly (visualization)
115
hg19
110
GRCh38
Lab
210
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
219 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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