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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
151
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
151
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
chromatin remodeller
Date released
115
August, 2017
23
October, 2018
12
June, 2019
1
October, 2019
Available data
100
bam
88
fastq
73
bigWig
56
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
151
Homo sapiens
Biosample type
74
tissue
65
in vitro differentiated cells
12
primary cell
Organ
529
liver
218
brain
218
pancreas
151
connective tissue
134
heart
128
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
52
kidney
50
blood
50
bodily fluid
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
151
AMP
Genome assembly (visualization)
74
hg19
73
GRCh38
Lab
151
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
4
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
151 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
65
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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