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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
529
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
60
December, 2017
52
August, 2017
45
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
650
bam
573
bigWig
438
fastq
390
bed narrowPeak
329
bigBed narrowPeak
174
tsv
86
tagAlign
54
bed broadPeak
54
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
739
Homo sapiens
Biosample type
380
cell line
334
tissue
14
in vitro differentiated cells
11
primary cell
Organ
773
pancreas
739
liver
648
connective tissue
483
adipose tissue
400
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
50
blood
50
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
739
AMP
Genome assembly (visualization)
574
hg19
502
GRCh38
Lab
688
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
25
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
target.investigated_as!
chromatin remodeller
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
739 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
358
14
1
2
2
2
1
tissue
liver
143
167
3
1
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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