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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
511
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
511
DNA binding
188
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
54
August, 2017
48
November, 2018
46
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
633
bam
576
bigWig
428
fastq
400
bed narrowPeak
321
bigBed narrowPeak
169
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
741
Homo sapiens
Biosample type
381
cell line
359
tissue
1
primary cell
Organ
946
pancreas
768
liver
682
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
741
AMP
Genome assembly (visualization)
577
hg19
487
GRCh38
Lab
670
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
target.investigated_as!
chromatin remodeller
organ_slims!
epithelium
BIOSAMPLE
ASSAY
741 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
358
14
1
1
2
2
2
1
tissue
liver
143
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatic stellate cell
1
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