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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
161
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
59
August, 2017
35
December, 2017
31
February, 2018
23
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
246
bigWig
243
bam
131
tsv
118
fastq
110
bed narrowPeak
30
tagAlign
16
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
314
Homo sapiens
Biosample type
2033
tissue
765
primary cell
548
cell line
314
in vitro differentiated cells
9
stem cell
Organ
71
connective tissue
22
embryo
20
epithelium
14
liver
2
pancreas
1
adipose tissue
1
heart
Project
314
AMP
Genome assembly (visualization)
249
hg19
242
GRCh38
4
hg18
Lab
275
AMP-T2D consortium
37
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
assay_slims!
DNA accessibility
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
314 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
59
5
1
cardiomyocytes
3
59
embryonic stem cell
34
7
1
neural progenitor cell
14
7
cardiac precursors (cardiac muscle cell)
19
1
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