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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
12
total RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
19
DNA binding
12
Transcription
3
3D chromatin structure
DNA accessibility
2
DNA methylation
Target of assay
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
13
November, 2017
12
February, 2020
6
October, 2017
5
July, 2019
2
March, 2020
Available data
17
tagAlign
14
tsv
4
bigWig
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
fastq
Organism
38
Homo sapiens
Biosample type
34
tissue
4
primary cell
Organ
154
pancreas
132
liver
128
epithelium
128
kidney
107
heart
89
bone element
64
connective tissue
40
adipose tissue
38
brain
35
musculature of body
26
eye
22
vasculature
21
blood vessel
10
lung
9
limb
7
vein
5
gonad
5
ovary
4
artery
4
skeleton
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
GRCh38
134
hg19
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
control
assay_slims!
DNA accessibility
assembly!
GRCh38
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
6
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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