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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
3
Hi-C
Assay category
DNA accessibility
79
DNA binding
3
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
3
October, 2022
2
October, 2019
Available data
2796
bigWig
2697
bam
1583
tsv
1325
bed narrowPeak
1088
fastq
801
bigBed narrowPeak
330
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
55
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
82
Homo sapiens
Biosample type
58
cell line
24
primary cell
Organ
58
liver
9
epithelium
6
brain
6
vasculature
4
blood vessel
3
pancreas
2
vein
Project
79
AMP
3
HPAP
Genome assembly (visualization)
82
hg19
62
GRCh38
Lab
79
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
13
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
Hi-C
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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