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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
246
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
663
February, 2021
356
May, 2021
350
August, 2017
335
November, 2017
242
October, 2019
225
August, 2021
218
May, 2020
168
July, 2018
101
May, 2022
100
February, 2023
97
July, 2019
97
May, 2019
73
December, 2017
72
November, 2018
66
April, 2019
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
33
November, 2019
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
23
June, 2019
12
October, 2017
December, 2019
9
April, 2020
9
November, 2020
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
261
bigWig
247
fastq
241
bam
132
bed narrowPeak
89
tsv
74
tagAlign
39
bed broadPeak
32
bigBed narrowPeak
31
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
344
Homo sapiens
Biosample type
250
tissue
59
in vitro differentiated cells
41
primary cell
Organ
162
pancreas
109
connective tissue
50
adipose tissue
41
liver
23
musculature of body
14
epithelium
Project
350
AMP
Genome assembly (visualization)
263
hg19
240
GRCh38
Lab
350
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
assay_slims!
DNA accessibility
month_released!
December, 2019
BIOSAMPLE
ASSAY
350 results
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ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
35
89
liver
37
3
1
subcutaneous abdominal adipose tissue
31
3
skeletal muscle tissue
19
4
pancreas
12
+ See 2 more…
in vitro differentiated cells
adipocyte
59
primary cell
skeletal muscle myoblast
14
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
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