Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
85
DNA binding
29
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
102
May, 2021
18
February, 2023
16
January, 2021
March, 2020
Available data
85
bam
85
bed narrowPeak
85
bigWig
84
tagAlign
Organism
136
Homo sapiens
Biosample type
108
primary cell
22
tissue
6
cell line
Organ
22
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
thymus
Project
2330
AMP
147
HPAP
136
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
85
GRCh38
85
hg19
Lab
135
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
control
assay_slims!
Transcription
month_released!
March, 2020
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
See all biosamples
Download