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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
WGBS
21
RRBS
1
DNAme array
1
whole genome sequencing assay
Assay category
1514
Transcription
1487
DNA binding
824
DNA accessibility
91
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
27
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
1
August, 2021
1
May, 2021
Available data
41
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
18
fastq
16
bam
15
bigWig
6
tsv
1
vcf
Organism
92
Homo sapiens
Biosample type
58
primary cell
32
tissue
2
cell line
Organ
53
epithelium
53
pancreas
10
heart
8
liver
7
connective tissue
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
45
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
44
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
target.investigated_as!
control
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
92 results
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WGBS
RRBS
DNAme array
whole genome sequencing assay
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 8 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
pancreas
2
1
aorta
2
+ See 11 more…
cell line
HepG2
1
1
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