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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
33
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
53
DNA accessibility
33
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
59
June, 2019
23
August, 2017
10
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
86
bigWig
78
bed narrowPeak
72
bam
65
bigBed narrowPeak
64
bed broadPeak
52
bed bed3+
51
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
108
Homo sapiens
Biosample type
96
tissue
12
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
29
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
91
hg19
71
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
108 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
13
6
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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