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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
27
DNA binding
9
Transcription
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
6
July, 2019
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
62
bigWig
54
bed narrowPeak
48
bam
46
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
78
Homo sapiens
Biosample type
66
tissue
12
primary cell
Organ
883
pancreas
679
liver
648
connective tissue
482
epithelium
467
adipose tissue
355
heart
337
kidney
227
brain
170
vasculature
165
blood vessel
159
bone element
129
artery
95
limb
78
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
18
ureter
18
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
65
hg19
48
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
assay_title!
Hi-C
month_released!
May, 2019
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
1
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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