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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
21
ChIP-seq
4
DNase-seq
4
total RNA-seq
single cell RNA-seq
Assay category
41
DNA accessibility
21
DNA binding
4
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
February, 2020
2
June, 2019
Available data
62
bed narrowPeak
29
bam
29
bigWig
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
Organism
66
Homo sapiens
Biosample type
cell line
64
tissue
2
primary cell
Organ
732
pancreas
645
connective tissue
467
adipose tissue
350
epithelium
341
liver
262
kidney
255
brain
216
heart
159
bone element
144
vasculature
139
blood vessel
105
limb
89
musculature of body
66
artery
60
eye
32
nerve
22
embryo
20
vein
18
ureter
17
spleen
16
skeleton
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
64
GRCh38
29
hg19
Lab
66
AMP-T2D consortium
target.investigated_as!
control
assay_title!
single cell RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
66 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
tissue
coronary artery
36
3
2
1
tibial artery
1
18
2
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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