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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
227
ChIP-seq
188
ATAC-seq
177
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
422
Transcription
273
DNA accessibility
227
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
202
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
46
August, 2017
43
April, 2018
42
July, 2018
29
October, 2019
26
July, 2019
26
June, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
565
bigWig
537
bam
386
fastq
270
bed narrowPeak
250
tsv
153
zippedFastqFolder
98
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1004
Homo sapiens
Biosample type
2459
tissue
1004
primary cell
495
cell line
244
in vitro differentiated cells
8
stem cell
Organ
377
epithelium
329
pancreas
32
vasculature
28
blood vessel
27
kidney
25
connective tissue
20
vein
15
brain
12
liver
8
blood
8
bodily fluid
6
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
480
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
576
hg19
497
GRCh38
Lab
448
AMP-T2D consortium
324
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1004 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
7
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
7
23
12
16
1
exocrine cell
39
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