Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
13
ChIP-seq
5
single cell RNA-seq
3
MeRIP-seq
2
Capture-C
1
Hi-C
Assay category
38
Transcription
19
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
14
November, 2019
5
July, 2018
5
March, 2020
3
November, 2020
2
August, 2021
Available data
53
bigWig
52
bam
39
tsv
14
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
71
cell line
5
primary cell
Organ
84
bone element
82
epithelium
76
pancreas
18
kidney
17
connective tissue
8
musculature of body
5
heart
4
embryo
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
72
AMP
4
T1D
Genome assembly (visualization)
55
hg19
52
GRCh38
Lab
73
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
4
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
MeRIP-seq
Capture-C
Hi-C
cell line
EndoC_BH1
33
19
13
3
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
Download