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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
14
DNA binding
14
Transcription
Target of assay
11
histone
11
histone modification
control
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
1
January, 2018
Available data
29
bigWig
28
bam
19
fastq
14
bed narrowPeak
14
tsv
2
bed bed3+
Organism
29
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
Organ
839
pancreas
670
liver
632
connective tissue
473
epithelium
455
adipose tissue
342
kidney
333
heart
251
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
29
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
1
hg18
Lab
29
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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