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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
Assay category
314
DNA binding
Target of assay
310
histone
310
histone modification
169
narrow histone mark
141
broad histone mark
control
4
transcription factor
Date released
89
May, 2021
74
August, 2017
56
November, 2017
40
October, 2019
27
May, 2020
16
August, 2021
12
October, 2017
Available data
2597
bigWig
2580
bam
1478
tsv
1373
bed narrowPeak
825
fastq
687
bigBed narrowPeak
314
tagAlign
263
bed broadPeak
261
bed bed3+
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
308
Homo sapiens
Biosample type
186
tissue
98
primary cell
30
in vitro differentiated cells
cell line
Organ
99
brain
47
liver
19
connective tissue
16
pancreas
13
musculature of body
7
adipose tissue
5
epithelium
1
pituitary gland
Project
230
AMP
84
T1D
Genome assembly (visualization)
232
GRCh38
220
hg19
Lab
230
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
target.investigated_as!
control
biosample_type!
cell line
BIOSAMPLE
ASSAY
314 results
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Clear Filters
ChIP-seq
tissue
liver
44
substantia nigra
14
caudate nucleus
13
layer of hippocampus
13
skeletal muscle tissue
13
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
adipocyte
12
cardiomyocytes
3
pancreatic PP cell
2
See all biosamples
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