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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
27
snATAC-seq
14
ATAC-seq
12
single cell RNA-seq
6
WGBS
5
ChIP-seq
2
pCHi-C
Assay category
113
Transcription
41
DNA accessibility
6
DNA methylation
5
DNA binding
Target of assay
5
transcription factor
control
Date released
350
May, 2021
265
November, 2017
167
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
106
August, 2017
78
August, 2021
73
September, 2018
60
October, 2019
59
November, 2018
59
September, 2020
48
July, 2018
47
June, 2019
43
April, 2018
37
December, 2017
31
February, 2018
28
December, 2018
28
July, 2019
24
March, 2020
20
January, 2019
19
November, 2019
9
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
May, 2019
4
October, 2022
3
June, 2018
2
October, 2018
Available data
117
bam
107
bigWig
107
tsv
45
fastq
15
bed narrowPeak
5
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
167
Homo sapiens
Biosample type
tissue
93
cell line
48
primary cell
26
in vitro differentiated cells
Organ
64
artery
64
blood vessel
64
heart
64
vasculature
32
epithelium
32
pancreas
11
connective tissue
2
liver
Project
122
AMP
45
HPAP
Genome assembly (visualization)
122
hg19
116
GRCh38
Lab
122
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
target.investigated_as!
control
biosample_type!
tissue
BIOSAMPLE
ASSAY
167 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
4
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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