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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
14
ChIP-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
17
Transcription
14
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
259
November, 2017
93
February, 2021
58
November, 2018
40
August, 2021
28
December, 2018
21
May, 2021
21
October, 2019
20
January, 2019
14
November, 2019
11
March, 2020
6
February, 2023
3
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bigWig
17
tsv
14
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
40
Homo sapiens
Biosample type
229
tissue
40
cell line
35
in vitro differentiated cells
3
primary cell
Organ
27
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
40
AMP
Genome assembly (visualization)
23
hg19
8
GRCh38
Lab
30
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
40 results
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total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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