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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
14
total RNA-seq
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
WGBS
1
whole genome sequencing assay
Assay category
318
DNA binding
14
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
46
November, 2018
26
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
319
bigWig
311
fastq
310
bam
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
11
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
340
Homo sapiens
Biosample type
340
cell line
314
tissue
14
in vitro differentiated cells
13
primary cell
Organ
340
liver
80
pancreas
73
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
340
AMP
Genome assembly (visualization)
316
hg19
268
GRCh38
Lab
314
AMP-T2D consortium
26
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
ATAC-seq
Hi-C
WGBS
whole genome sequencing assay
cell line
HepG2
318
14
2
2
1
1
1
1
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