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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
322
ChIP-seq
66
total RNA-seq
9
ATAC-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
322
DNA binding
66
Transcription
9
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
301
transcription factor
82
recombinant protein
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
66
February, 2021
46
November, 2018
27
August, 2021
5
January, 2019
1
December, 2018
1
May, 2020
Available data
375
bigWig
374
bam
320
bed narrowPeak
311
fastq
293
bigBed narrowPeak
67
tsv
58
bed broadPeak
58
bigBed broadPeak
15
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
405
Homo sapiens
Biosample type
432
tissue
405
cell line
45
primary cell
14
in vitro differentiated cells
Organ
341
liver
81
pancreas
74
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
405
AMP
Genome assembly (visualization)
381
hg19
332
GRCh38
Lab
378
AMP-T2D consortium
27
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
405 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
318
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
4
52
8
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