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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
366
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
366
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
38
histone
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
244
November, 2017
57
November, 2018
27
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
361
bigWig
357
bed narrowPeak
354
bam
342
fastq
333
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
366
Homo sapiens
Biosample type
366
cell line
94
tissue
49
in vitro differentiated cells
10
primary cell
Organ
300
liver
53
blood
53
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
366
AMP
Genome assembly (visualization)
357
hg19
314
GRCh38
Lab
355
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
cell line
HepG2
300
GM12878
53
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
iPSC derived cell line
1
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