Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
161
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
60
August, 2017
47
May, 2021
35
December, 2017
28
August, 2021
16
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
261
bam
259
bigWig
132
bed narrowPeak
tsv
119
fastq
30
tagAlign
20
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
226
Homo sapiens
Biosample type
1474
tissue
786
primary cell
460
cell line
226
in vitro differentiated cells
5
stem cell
Organ
84
connective tissue
18
epithelium
16
embryo
14
liver
2
pancreas
1
adipose tissue
Project
226
AMP
Genome assembly (visualization)
165
hg19
133
GRCh38
4
hg18
Lab
177
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
files.file_type!
tsv
BIOSAMPLE
ASSAY
226 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
59
8
1
1
1
embryonic stem cell
34
6
5
neural progenitor cell
14
10
hepatocyte
14
pancreatic endoderm
13
1
+ See 19 more…
See all biosamples
Download